SUPERFAMILY 1.75 HMM library and genome assignments server

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Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035990 459 2005-09-08 d1chua3 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
0041342 460 2005-09-08 d1neka3 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
0036733 429 2005-09-08 d1e39a3 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
0052033 1965 2008-09-10 d2bs2a3 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
0040050 470 2005-09-08 d1kf6a3 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
0036265 463 2005-09-08 d1d4ca3 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
0042899 619 2005-09-08 d1qo8a3 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
0039665 56 2005-09-08 d1jnra3 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain