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C-type lectin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 72 SUPERFAMILY models representing the C-type lectin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035828 1965 2005-09-08 d1c3aa_ C-type lectin domain
0038340 1825 2005-09-08 d1gz2a_ C-type lectin domain
0039821 2206 2005-09-08 d1jzna_ C-type lectin domain
0042097 2174 2005-09-08 d1oz7b_ C-type lectin domain
0044411 2137 2005-09-08 d1ukmb_ C-type lectin domain
0046069 5595 2008-09-10 d1c3ab_ C-type lectin domain
0047699 4958 2008-09-10 d1jwib_ C-type lectin domain
0049420 2943 2008-09-10 d1sl6a_ C-type lectin domain
0035372 2044 2005-09-08 d1b6ea_ C-type lectin domain
0039268 2169 2005-09-08 d1ixxa_ C-type lectin domain
0043955 2299 2005-09-08 d1tdqb_ C-type lectin domain
0044992 2139 2005-09-08 d1wmza_ C-type lectin domain
0047400 5670 2008-09-10 d1ioda_ C-type lectin domain
0049147 1719 2008-09-10 d1rdl1_ C-type lectin domain
0051179 5573 2008-09-10 d1y17a1 C-type lectin domain
0036620 2127 2005-09-08 d1dv8a_ C-type lectin domain
0038672 1718 2005-09-08 d1hq8a_ C-type lectin domain
0044448 2222 2005-09-08 d1umrc_ C-type lectin domain
0046789 1377 2008-09-10 d1fifa1 C-type lectin domain
0049565 5747 2008-09-10 d1t8ca1 C-type lectin domain
0037892 1918 2005-09-08 d1g1sa1 C-type lectin domain
0039794 1702 2005-09-08 d1jwia_ C-type lectin domain
0042096 2023 2005-09-08 d1oz7a_ C-type lectin domain
0044410 2152 2005-09-08 d1ukma_ C-type lectin domain
0046041 821 2008-09-10 d1byfa_ C-type lectin domain
0047544 2860 2008-09-10 d1ja3a_ C-type lectin domain
0049355 4599 2008-09-10 d1sb2b1 C-type lectin domain
0051365 2896 2008-09-10 d1ypqa1 C-type lectin domain
0035288 1741 2005-09-08 d1b08a1 C-type lectin domain
0036827 2155 2005-09-08 d1e87a_ C-type lectin domain
0038795 1466 2005-09-08 d1hyra_ C-type lectin domain
0042719 1958 2005-09-08 d1qdda_ C-type lectin domain
0044536 1979 2005-09-08 d1uv0a_ C-type lectin domain
0046900 5388 2008-09-10 d1g1ta1 C-type lectin domain
0049081 1323 2008-09-10 d1r13a1 C-type lectin domain
0050635 3979 2008-09-10 d1wk1a_ C-type lectin domain
0038485 1561 2005-09-08 d1h8ua_ C-type lectin domain
0039984 2223 2005-09-08 d1k9ia_ C-type lectin domain
0042149 1478 2005-09-08 d1p4ld_ C-type lectin domain
0044447 1987 2005-09-08 d1umra_ C-type lectin domain
0046554 5822 2008-09-10 d1egia_ C-type lectin domain
0047796 1164 2008-09-10 d1kg0c_ C-type lectin domain
0035579 2203 2005-09-08 d1bj3a_ C-type lectin domain
0037805 2144 2005-09-08 d1fvub_ C-type lectin domain
0039269 2219 2005-09-08 d1ixxb_ C-type lectin domain
0044061 1983 2005-09-08 d1tn3a_ C-type lectin domain
0045154 2199 2005-09-08 d2afpa_ C-type lectin domain
0047401 5417 2008-09-10 d1iodb_ C-type lectin domain
0049354 5031 2008-09-10 d1sb2a1 C-type lectin domain
0038730 1650 2005-09-08 d1hupa1 C-type lectin domain
0046868 2534 2008-09-10 d1fvua_ C-type lectin domain
0048999 2918 2008-09-10 d1qo3c_ C-type lectin domain
0050046 5431 2008-09-10 d1v4lb_ C-type lectin domain
0053191 1642 2008-09-10 d2msba_ C-type lectin domain
0042435 8 2005-09-08 d1prtb2 Aerolysin/Pertussis toxin (APT) domain
0048802 51 2008-09-10 d1prea1 Aerolysin/Pertussis toxin (APT) domain
0042437 7 2005-09-08 d1prtc2 Aerolysin/Pertussis toxin (APT) domain
0037303 20 2005-09-08 d1f00i3 Invasin/intimin cell-adhesion fragment, C-terminal domain
0036181 3 2005-09-08 d1cwva5 Invasin/intimin cell-adhesion fragment, C-terminal domain
0041727 520 2005-09-08 d1o7bt_ Link domain
0044527 523 2005-09-08 d1uuha_ Link domain
0040181 49 2005-09-08 d1koea_ Endostatin
0035634 46 2005-09-08 d1bnla_ Endostatin
0036666 40 2005-09-08 d1dy2a_ Endostatin
0040505 155 2005-09-08 d1li1c2 Noncollagenous (NC1) domain of collagen IV
0040503 155 2005-09-08 d1li1a2 Noncollagenous (NC1) domain of collagen IV
0049550 501 2008-09-10 d1t61c1 Noncollagenous (NC1) domain of collagen IV
0040502 155 2005-09-08 d1li1a1 Noncollagenous (NC1) domain of collagen IV
0051512 1471 2008-09-10 d1z70x1 Sulfatase-modifying factor-like
0051196 1487 2008-09-10 d1y4ja1 Sulfatase-modifying factor-like
0051408 131 2008-09-10 d1yu0a2 Mtd variable domain
0051409 192 2008-09-10 d1yu3a2 Mtd variable domain