SUPERFAMILY 1.75 HMM library and genome assignments server

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FAH superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the FAH superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038911 638 2005-09-08 d1i7oa2 FAH
0049351 2311 2008-09-10 d1sawa_ FAH
0041525 626 2005-09-08 d1nr9a_ FAH
0038910 537 2005-09-08 d1i7oa1 FAH
0047268 1615 2008-09-10 d1hyoa2 FAH
0041438 622 2005-09-08 d1nkqa_ FAH
0043774 492 2005-09-08 d1sv6a_ FAH