SUPERFAMILY 1.75 HMM library and genome assignments server

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Insert subdomain of RNA polymerase alpha subunit superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 4 SUPERFAMILY models representing the Insert subdomain of RNA polymerase alpha subunit superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047315 466 2008-09-10 d1i6va2 Insert subdomain of RNA polymerase alpha subunit
0035474 257 2005-09-08 d1bdfa2 Insert subdomain of RNA polymerase alpha subunit
0039234 285 2005-09-08 d1iw7a2 Insert subdomain of RNA polymerase alpha subunit
0038874 359 2005-09-08 d1i50c2 Insert subdomain of RNA polymerase alpha subunit