SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

beta-lactamase/transpeptidase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 43 SUPERFAMILY models representing the beta-lactamase/transpeptidase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0038811 345 2005-09-08 d1hzoa_ beta-Lactamase/D-ala carboxypeptidase
0046343 2032 2008-09-10 d1djaa_ beta-Lactamase/D-ala carboxypeptidase
0047476 2135 2008-09-10 d1iysa_ beta-Lactamase/D-ala carboxypeptidase
0048985 2140 2008-09-10 d1qmea4 beta-Lactamase/D-ala carboxypeptidase
0051964 1332 2008-09-10 d2bg1a1 beta-Lactamase/D-ala carboxypeptidase
0037741 616 2005-09-08 d1fr1a_ beta-Lactamase/D-ala carboxypeptidase
0046014 4733 2008-09-10 d1buea_ beta-Lactamase/D-ala carboxypeptidase
0046615 1581 2008-09-10 d1es5a_ beta-Lactamase/D-ala carboxypeptidase
0048305 4221 2008-09-10 d1n9ba_ beta-Lactamase/D-ala carboxypeptidase
0053342 3269 2008-09-10 d4blma_ beta-Lactamase/D-ala carboxypeptidase
0046438 4679 2008-09-10 d1e25a_ beta-Lactamase/D-ala carboxypeptidase
0047733 3175 2008-09-10 d1k38a_ beta-Lactamase/D-ala carboxypeptidase
0049712 1194 2008-09-10 d1tvfa2 beta-Lactamase/D-ala carboxypeptidase
0052144 4461 2008-09-10 d2cc1a1 beta-Lactamase/D-ala carboxypeptidase
0038744 566 2005-09-08 d1hvba_ beta-Lactamase/D-ala carboxypeptidase
0046147 1691 2008-09-10 d1ci9a_ beta-Lactamase/D-ala carboxypeptidase
0047175 1739 2008-09-10 d1hd8a2 beta-Lactamase/D-ala carboxypeptidase
0048511 4272 2008-09-10 d1o7ea_ beta-Lactamase/D-ala carboxypeptidase
0051055 2471 2008-09-10 d1xp4a2 beta-Lactamase/D-ala carboxypeptidase
0054384 4299 2010-05-31 d2olua2 beta-Lactamase/D-ala carboxypeptidase
0046008 3598 2008-09-10 d1bsga_ beta-Lactamase/D-ala carboxypeptidase
0046565 1176 2008-09-10 d1ei5a3 beta-Lactamase/D-ala carboxypeptidase
0048110 3240 2008-09-10 d1m6ka_ beta-Lactamase/D-ala carboxypeptidase
0046422 4181 2008-09-10 d1dy6a_ beta-Lactamase/D-ala carboxypeptidase
0047727 2166 2008-09-10 d1k25a4 beta-Lactamase/D-ala carboxypeptidase
0049225 2144 2008-09-10 d1rp5a4 beta-Lactamase/D-ala carboxypeptidase
0052119 2166 2008-09-10 d2c5wb1 beta-Lactamase/D-ala carboxypeptidase
0038040 673 2005-09-08 d1gcea_ beta-Lactamase/D-ala carboxypeptidase
0046070 1840 2008-09-10 d1c3ba_ beta-Lactamase/D-ala carboxypeptidase
0046929 4119 2008-09-10 d1g6aa_ beta-Lactamase/D-ala carboxypeptidase
0048423 4430 2008-09-10 d1nrfa_ beta-Lactamase/D-ala carboxypeptidase
0050891 3139 2008-09-10 d1xa1a_ beta-Lactamase/D-ala carboxypeptidase
0053815 2308 2010-05-31 d2dcfa1 beta-Lactamase/D-ala carboxypeptidase
0045791 3180 2008-09-10 d1alqa_ beta-Lactamase/D-ala carboxypeptidase
0046452 3099 2008-09-10 d1e3ua_ beta-Lactamase/D-ala carboxypeptidase
0048080 2469 2008-09-10 d1m40a_ beta-Lactamase/D-ala carboxypeptidase
0050287 4822 2008-09-10 d1vqqa3 beta-Lactamase/D-ala carboxypeptidase
0052485 1856 2008-09-10 d2drwa1 beta-Lactamase/D-ala carboxypeptidase
0044213 430 2005-09-08 d1u60a_ Glutaminase
0040978 441 2005-09-08 d1mkia_ Glutaminase
0050388 1339 2008-09-10 d1w79a1 Dac-like
0050370 1387 2008-09-10 d1w5da1 Dac-like
0052534 1233 2008-09-10 d2ex2a1 Dac-like