SUPERFAMILY 1.75 HMM library and genome assignments server

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Acyl-CoA dehydrogenase NM domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 14 SUPERFAMILY models representing the Acyl-CoA dehydrogenase NM domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036988 2079 2005-09-08 d1egda2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0049407 4789 2008-09-10 d1siqa2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0052370 4829 2008-09-10 d2d29a2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0043102 1931 2005-09-08 d1r2ja2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0049932 4848 2008-09-10 d1ukwa2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0049259 4839 2008-09-10 d1rx0a2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0046013 4820 2008-09-10 d1buca2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0052090 4771 2008-09-10 d2c12a2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0039701 2154 2005-09-08 d1jqia2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0049822 354 2008-09-10 d1u8va2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0047447 4839 2008-09-10 d1ivha2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0045540 2091 2005-09-08 d3mdda2 Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains
0047431 4688 2008-09-10 d1is2a3 acyl-CoA oxidase N-terminal domains
0050327 2732 2008-09-10 d1w07a3 acyl-CoA oxidase N-terminal domains