SUPERFAMILY 1.75 HMM library and genome assignments server

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Carbohydrate phosphatase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 14 SUPERFAMILY models representing the Carbohydrate phosphatase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039685 665 2005-09-08 d1jp4a_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0049438 503 2008-09-10 d1spia_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0036465 763 2005-09-08 d1dk4a_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0047396 1700 2008-09-10 d1inpa_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0044712 812 2005-09-08 d1vdwa_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0037769 371 2005-09-08 d1ftaa_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0035592 383 2005-09-08 d1bk4a_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0046304 1602 2008-09-10 d1dcua_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0042779 668 2005-09-08 d1qgxa_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0050973 2917 2008-09-10 d1xi6a_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0037748 361 2005-09-08 d1frpa_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0047954 1736 2008-09-10 d1lbva_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0045316 689 2005-09-08 d2hhma_ Inositol monophosphatase/fructose-1,6-bisphosphatase-like
0048372 276 2008-09-10 d1ni9a_ GlpX-like bacterial fructose-1,6-bisphosphatase