SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

DNA/RNA polymerases superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 34 SUPERFAMILY models representing the DNA/RNA polymerases superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036278 554 2005-09-08 d1d5aa2 DNA polymerase I
0043905 383 2005-09-08 d1t7pa2 DNA polymerase I
0049324 2043 2008-09-10 d1s5ja2 DNA polymerase I
0042660 550 2005-09-08 d1q8ia2 DNA polymerase I
0044996 557 2005-09-08 d1wnsa2 DNA polymerase I
0040062 439 2005-09-08 d1kfsa2 DNA polymerase I
0044001 555 2005-09-08 d1tgoa2 DNA polymerase I
0042977 424 2005-09-08 d1qtma2 DNA polymerase I
0046174 601 2008-09-10 d1clqa2 DNA polymerase I
0053016 1647 2008-09-10 d2hhva2 DNA polymerase I
0042798 553 2005-09-08 d1qhta2 DNA polymerase I
0050972 625 2008-09-10 d1xhxa2 DNA polymerase I
0044909 2375 2005-09-08 d1vrta2 Reverse transcriptase
0038511 1750 2005-09-08 d1hara_ Reverse transcriptase
0049251 30020 2008-09-10 d1rw3a_ Reverse transcriptase
0041083 1962 2005-09-08 d1mu2a2 Reverse transcriptase
0035949 116 2005-09-08 d1ceza_ T7 RNA polymerase
0054504 22 2010-05-31 d2pgga1 RNA-dependent RNA-polymerase
0049138 3772 2008-09-10 d1ra6a_ RNA-dependent RNA-polymerase
0051077 1714 2008-09-10 d1xr6a_ RNA-dependent RNA-polymerase
0049312 1243 2008-09-10 d1s48a_ RNA-dependent RNA-polymerase
0041091 5 2005-09-08 d1muka_ RNA-dependent RNA-polymerase
0047809 1554 2008-09-10 d1khva_ RNA-dependent RNA-polymerase
0051076 3575 2008-09-10 d1xr5a_ RNA-dependent RNA-polymerase
0049395 1464 2008-09-10 d1sh0a_ RNA-dependent RNA-polymerase
0046068 809 2008-09-10 d1c2pa_ RNA-dependent RNA-polymerase
0051078 1713 2008-09-10 d1xr7a_ RNA-dependent RNA-polymerase
0044175 470 2005-09-08 d1u09a_ RNA-dependent RNA-polymerase
0047189 5 2008-09-10 d1hhsa_ dsRNA phage RNA-dependent RNA-polymerase
0047702 51 2008-09-10 d1jx4a2 Lesion bypass DNA polymerase (Y-family), catalytic domain
0049525 650 2008-09-10 d1t3na2 Lesion bypass DNA polymerase (Y-family), catalytic domain
0043914 750 2005-09-08 d1t94a2 Lesion bypass DNA polymerase (Y-family), catalytic domain
0047595 46 2008-09-10 d1jiha2 Lesion bypass DNA polymerase (Y-family), catalytic domain
0047722 1393 2008-09-10 d1k1sa2 Lesion bypass DNA polymerase (Y-family), catalytic domain