SUPERFAMILY 1.75 HMM library and genome assignments server

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Prokaryotic type I DNA topoisomerase superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 3 SUPERFAMILY models representing the Prokaryotic type I DNA topoisomerase superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048235 2149 2008-09-10 d1mw9x_ Prokaryotic type I DNA topoisomerase
0038143 510 2005-09-08 d1gkub3 Prokaryotic type I DNA topoisomerase
0036294 513 2005-09-08 d1d6ma_ Prokaryotic type I DNA topoisomerase