SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

OMPA-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 6 SUPERFAMILY models representing the OMPA-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048693 2376 2008-09-10 d1p4ta_ Outer membrane protein
0046946 1909 2008-09-10 d1g90a_ Outer membrane protein
0048966 1179 2008-09-10 d1qj8a_ Outer membrane protein
0041003 10 2005-09-08 d1mm4a_ Outer membrane enzyme PagP
0051384 257 2008-09-10 d1ys5a1 GNA1870 immunodominant domain-like
0053719 112 2010-05-31 d2axto1 PsbO-like