SUPERFAMILY 1.75 HMM library and genome assignments server

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Growth factor receptor domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 12 SUPERFAMILY models representing the Growth factor receptor domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0045987 201 2008-09-10 d1boea_ Growth factor receptor domain
0048304 5040 2008-09-10 d1n8zc4 Growth factor receptor domain
0048301 6448 2008-09-10 d1n8yc3 Growth factor receptor domain
0047449 7023 2008-09-10 d1ivoa3 Growth factor receptor domain
0053842 461 2010-05-31 d2dspb1 Growth factor receptor domain
0048303 5692 2008-09-10 d1n8zc3 Growth factor receptor domain
0048104 5098 2008-09-10 d1m6bb4 Growth factor receptor domain
0047362 9159 2008-09-10 d1igra3 Growth factor receptor domain
0048419 5306 2008-09-10 d1nqla4 Growth factor receptor domain
0048302 5344 2008-09-10 d1n8yc4 Growth factor receptor domain
0048103 5648 2008-09-10 d1m6ba3 Growth factor receptor domain
0053854 8851 2010-05-31 d2dtge6 Growth factor receptor domain