SUPERFAMILY 1.75 HMM library and genome assignments server

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EGF/Laminin superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 64 SUPERFAMILY models representing the EGF/Laminin superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037555 750 2005-09-08 d1ffma_ EGF-type module
0039882 635 2005-09-08 d1k36a_ EGF-type module
0045115 2060 2005-09-08 d1zaqa_ EGF-type module
0046526 273 2008-09-10 d1edmb_ EGF-type module
0049500 6241 2008-09-10 d1szba2 EGF-type module
0053592 14851 2010-05-31 d1nqlb_ EGF-type module
0036621 3641 2005-09-08 d1dval1 EGF-type module
0039055 3503 2005-09-08 d1ijqa2 EGF-type module
0040564 4564 2005-09-08 d1lmja1 EGF-type module
0044576 5307 2005-09-08 d1uzpa1 EGF-type module
0048473 4316 2008-09-10 d1nzia2 EGF-type module
0053080 12728 2008-09-10 d2i9aa1 EGF-type module
0035212 3846 2005-09-08 d1autl2 EGF-type module
0042295 3786 2005-09-08 d1pfxl2 EGF-type module
0045804 16281 2008-09-10 d1apqa_ EGF-type module
0046589 10107 2008-09-10 d1emoa2 EGF-type module
0048292 5408 2008-09-10 d1n7da3 EGF-type module
0049664 12098 2008-09-10 d1toza2 EGF-type module
0037086 5693 2005-09-08 d1emoa1 EGF-type module
0045033 591 2005-09-08 d1xdtr_ EGF-type module
0046224 13206 2008-09-10 d1cvua2 EGF-type module
0048718 4573 2008-09-10 d1p9ja_ EGF-type module
0053580 10886 2010-05-31 d1faxl_ EGF-type module
0036113 4027 2005-09-08 d1cqea2 EGF-type module
0038803 3713 2005-09-08 d1hz8a1 EGF-type module
0044080 966 2005-09-08 d1tpga1 EGF-type module
0046108 589 2008-09-10 d1ccfa_ EGF-type module
0046901 12106 2008-09-10 d1g1ta2 EGF-type module
0050997 642 2008-09-10 d1xkba1 EGF-type module
0035211 3003 2005-09-08 d1autl1 EGF-type module
0038126 3121 2005-09-08 d1gk5a_ EGF-type module
0040138 3638 2005-09-08 d1klil_ EGF-type module
0042294 750 2005-09-08 d1pfxl1 EGF-type module
0045767 26 2008-09-10 d1adxa_ EGF-type module
0046553 2004 2008-09-10 d1egfa_ EGF-type module
0048204 507 2008-09-10 d1moxc_ EGF-type module
0049663 454 2008-09-10 d1toza1 EGF-type module
0036644 3619 2005-09-08 d1dx5i3 EGF-type module
0039114 299 2005-09-08 d1ioxa_ EGF-type module
0040565 4299 2005-09-08 d1lmja2 EGF-type module
0044577 5050 2005-09-08 d1uzpa2 EGF-type module
0047815 4446 2008-09-10 d1kigl_ EGF-type module
0038508 2423 2005-09-08 d1haea_ EGF-type module
0043221 3627 2005-09-08 d1rfnb_ EGF-type module
0046899 12156 2008-09-10 d1g1sa2 EGF-type module
0048437 12911 2008-09-10 d1nt0a3 EGF-type module
0049665 64 2008-09-10 d1toza3 EGF-type module
0040140 1112 2005-09-08 d1kloa1 Laminin-type module
0040142 1188 2005-09-08 d1kloa3 Laminin-type module
0040141 505 2005-09-08 d1kloa2 Laminin-type module
0048017 57 2008-09-10 d1lr7a1 Follistatin (FS) module N-terminal domain, FS-N
0048447 58 2008-09-10 d1nuba2 Follistatin (FS) module N-terminal domain, FS-N
0041189 60 2005-09-08 d1n1ia2 Merozoite surface protein 1 (MSP-1)
0046120 363 2008-09-10 d1ceja1 Merozoite surface protein 1 (MSP-1)
0041188 104 2005-09-08 d1n1ia1 Merozoite surface protein 1 (MSP-1)
0046121 380 2008-09-10 d1ceja2 Merozoite surface protein 1 (MSP-1)
0048531 380 2008-09-10 d1ob1c2 Merozoite surface protein 1 (MSP-1)
0035423 136 2005-09-08 d1b9wa2 Merozoite surface protein 1 (MSP-1)
0045912 363 2008-09-10 d1b9wa1 Merozoite surface protein 1 (MSP-1)
0038148 2387 2005-09-08 d1gl4a2 EGF-like domain of nidogen-1
0047694 684 2008-09-10 d1jv2b5 Integrin beta EGF-like domains
0039776 72 2005-09-08 d1jv2b4 Integrin beta EGF-like domains
0047931 539 2008-09-10 d1l3ya_ Integrin beta EGF-like domains
0053152 52 2008-09-10 d2j5ha1 Cripto EGF-like domain-like