SUPERFAMILY 1.75 HMM library and genome assignments server

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LDL receptor-like module superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 15 SUPERFAMILY models representing the LDL receptor-like module superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036243 3135 2005-09-08 d1d2la_ LDL receptor-like module
0041242 3128 2005-09-08 d1n7daa LDL receptor-like module
0040464 3169 2005-09-08 d1ldla_ LDL receptor-like module
0037446 2956 2005-09-08 d1f8za_ LDL receptor-like module
0052952 7868 2008-09-10 d2gtlm2 LDL receptor-like module
0036124 3119 2005-09-08 d1cr8a_ LDL receptor-like module
0041241 2506 2005-09-08 d1n7da7 LDL receptor-like module
0039720 3088 2005-09-08 d1jrfa_ LDL receptor-like module
0052956 7514 2008-09-10 d2gtlo2 LDL receptor-like module
0037404 3116 2005-09-08 d1f5ya2 LDL receptor-like module
0044680 2918 2005-09-08 d1v9u5_ LDL receptor-like module
0035070 2770 2005-09-08 d1ajja_ LDL receptor-like module
0041240 3048 2005-09-08 d1n7da6 LDL receptor-like module
0039420 3136 2005-09-08 d1j8ea_ LDL receptor-like module
0052954 7447 2008-09-10 d2gtln2 LDL receptor-like module