SUPERFAMILY 1.75 HMM library and genome assignments server

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Kringle-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 24 SUPERFAMILY models representing the Kringle-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035559 442 2005-09-08 d1bhta2 Kringle modules
0039525 430 2005-09-08 d1jfna_ Kringle modules
0042382 444 2005-09-08 d1pmla_ Kringle modules
0040097 443 2005-09-08 d1ki0a3 Kringle modules
0045401 437 2005-09-08 d2pf1a1 Kringle modules
0034809 439 2005-09-08 d1a0ha1 Kringle modules
0045618 441 2005-09-08 d5hpga_ Kringle modules
0035938 441 2005-09-08 d1ceaa_ Kringle modules
0040096 441 2005-09-08 d1ki0a2 Kringle modules
0045327 442 2005-09-08 d2hpqp_ Kringle modules
0053081 1290 2008-09-10 d2i9aa2 Kringle modules
0040225 442 2005-09-08 d1krna_ Kringle modules
0045529 441 2005-09-08 d3kiva_ Kringle modules
0036829 253 2005-09-08 d1e88a2 Fibronectin type II module
0040395 252 2005-09-08 d1l6ja3 Fibronectin type II module
0047144 832 2008-09-10 d1h8pa2 Fibronectin type II module
0036025 253 2005-09-08 d1ck7a3 Fibronectin type II module
0039409 253 2005-09-08 d1j7ma_ Fibronectin type II module
0040397 253 2005-09-08 d1l6ja5 Fibronectin type II module
0036828 253 2005-09-08 d1e88a1 Fibronectin type II module
0040228 253 2005-09-08 d1ks0a_ Fibronectin type II module
0038481 253 2005-09-08 d1h8pa1 Fibronectin type II module
0040396 253 2005-09-08 d1l6ja4 Fibronectin type II module
0036026 253 2005-09-08 d1ck7a4 Fibronectin type II module