SUPERFAMILY 1.75 HMM library and genome assignments server

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Complement control module/SCR domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 35 SUPERFAMILY models representing the Complement control module/SCR domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0036033 3239 2005-09-08 d1ckla2 Complement control module/SCR domain
0038352 3348 2005-09-08 d1h03p1 Complement control module/SCR domain
0042990 3309 2005-09-08 d1quba2 Complement control module/SCR domain
0051584 8244 2008-09-10 d1zjka2 Complement control module/SCR domain
0054764 5396 2010-05-31 d2z3qb1 Complement control module/SCR domain
0038132 3194 2005-09-08 d1gkga2 Complement control module/SCR domain
0041891 3152 2005-09-08 d1ok3a1 Complement control module/SCR domain
0047039 5093 2008-09-10 d1gpza3 Complement control module/SCR domain
0053252 7588 2008-09-10 d2ok5a4 Complement control module/SCR domain
0037922 2 2005-09-08 d1g40a1 Complement control module/SCR domain
0038525 3305 2005-09-08 d1hcca_ Complement control module/SCR domain
0046917 3953 2008-09-10 d1g40a2 Complement control module/SCR domain
0051922 8155 2008-09-10 d2b5id2 Complement control module/SCR domain
0036032 2804 2005-09-08 d1ckla1 Complement control module/SCR domain
0038220 3169 2005-09-08 d1gpza2 Complement control module/SCR domain
0042989 3279 2005-09-08 d1quba1 Complement control module/SCR domain
0049458 9534 2008-09-10 d1ss2a_ Complement control module/SCR domain
0054544 6752 2010-05-31 d2psmc1 Complement control module/SCR domain
0037925 3275 2005-09-08 d1g40a4 Complement control module/SCR domain
0041599 3282 2005-09-08 d1nwva1 Complement control module/SCR domain
0046992 3460 2008-09-10 d1ghqc2 Complement control module/SCR domain
0053251 10043 2008-09-10 d2ok5a3 Complement control module/SCR domain
0037078 3093 2005-09-08 d1elva2 Complement control module/SCR domain
0038353 3357 2005-09-08 d1h03p2 Complement control module/SCR domain
0042991 3142 2005-09-08 d1quba3 Complement control module/SCR domain
0051921 2079 2008-09-10 d2b5id1 Complement control module/SCR domain
0035816 64 2005-09-08 d1c1za5 Complement control module/SCR domain
0038134 3060 2005-09-08 d1gkna1 Complement control module/SCR domain
0042607 2876 2005-09-08 d1q3xa2 Complement control module/SCR domain
0049044 3870 2008-09-10 d1quba4 Complement control module/SCR domain
0053600 8707 2010-05-31 d1ppqa_ Complement control module/SCR domain
0037924 3301 2005-09-08 d1g40a3 Complement control module/SCR domain
0038577 3353 2005-09-08 d1hfia_ Complement control module/SCR domain
0046991 9895 2008-09-10 d1ghqb1 Complement control module/SCR domain
0053250 9732 2008-09-10 d2ok5a2 Complement control module/SCR domain