SUPERFAMILY 1.75 HMM library and genome assignments server

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TNF receptor-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 18 SUPERFAMILY models representing the TNF receptor-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039628 625 2005-09-08 d1jmab1 TNF receptor-like
0036276 11 2005-09-08 d1d4va3 TNF receptor-like
0043593 242 2005-09-08 d1sg1x3 TNF receptor-like
0053012 80 2008-09-10 d2heyr3 TNF receptor-like
0037254 135 2005-09-08 d1exta3 TNF receptor-like
0046650 953 2008-09-10 d1exta1 TNF receptor-like
0036275 142 2005-09-08 d1d4va2 TNF receptor-like
0043592 10 2005-09-08 d1sg1x2 TNF receptor-like
0053011 15 2008-09-10 d2heyr2 TNF receptor-like
0039629 124 2005-09-08 d1jmab2 TNF receptor-like
0049385 16 2008-09-10 d1sg1x4 TNF receptor-like
0037253 44 2005-09-08 d1exta2 TNF receptor-like
0046273 31 2008-09-10 d1d4va1 TNF receptor-like
0043591 311 2005-09-08 d1sg1x1 TNF receptor-like
0053010 202 2008-09-10 d2heyr1 TNF receptor-like
0048622 7 2008-09-10 d1oqdk_ BAFF receptor-like
0041972 3 2005-09-08 d1oqek_ BAFF receptor-like
0051112 31 2008-09-10 d1xuta_ BAFF receptor-like