SUPERFAMILY 1.75 HMM library and genome assignments server

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Zn2/Cys6 DNA-binding domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 7 SUPERFAMILY models representing the Zn2/Cys6 DNA-binding domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035235 1132 2005-09-08 d1aw6a_ Zn2/Cys6 DNA-binding domain
0045307 1227 2005-09-08 d2hapc1 Zn2/Cys6 DNA-binding domain
0042516 1000 2005-09-08 d1pyia1 Zn2/Cys6 DNA-binding domain
0045159 1151 2005-09-08 d2alca_ Zn2/Cys6 DNA-binding domain
0036289 940 2005-09-08 d1d66a1 Zn2/Cys6 DNA-binding domain
0046168 764 2008-09-10 d1clda_ Zn2/Cys6 DNA-binding domain
0045125 821 2005-09-08 d1zmec1 Zn2/Cys6 DNA-binding domain