SUPERFAMILY 1.75 HMM library and genome assignments server

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Retrovirus zinc finger-like domains superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 8 SUPERFAMILY models representing the Retrovirus zinc finger-like domains superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0049805 1567 2008-09-10 d1u6pa_ Retrovirus zinc finger-like domains
0046619 710 2008-09-10 d1eska_ Retrovirus zinc finger-like domains
0036578 3 2005-09-08 d1dsqa_ Retrovirus zinc finger-like domains
0048327 510 2008-09-10 d1nc8a_ Retrovirus zinc finger-like domains
0045753 1014 2008-09-10 d1aafa_ Retrovirus zinc finger-like domains
0036042 28 2005-09-08 d1cl4a_ Retrovirus zinc finger-like domains
0046717 1003 2008-09-10 d1f6ua_ Retrovirus zinc finger-like domains
0036581 28 2005-09-08 d1dsva_ Retrovirus zinc finger-like domains