SUPERFAMILY 1.75 HMM library and genome assignments server

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Rubredoxin-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 18 SUPERFAMILY models representing the Rubredoxin-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043187 724 2005-09-08 d1rb9a_ Rubredoxin
0039154 720 2005-09-08 d1iroa_ Rubredoxin
0045637 705 2005-09-08 d6rxna_ Rubredoxin
0042711 692 2005-09-08 d1qcva_ Rubredoxin
0046413 1055 2008-09-10 d1dx8a_ Rubredoxin
0036623 208 2005-09-08 d1dvba2 Rubredoxin
0045630 716 2005-09-08 d5rxna_ Rubredoxin
0052486 748 2008-09-10 d2dsxa1 Rubredoxin
0043471 705 2005-09-08 d1s24a_ Rubredoxin
0048398 795 2008-09-10 d1nnqa2 Rubredoxin
0039201 725 2005-09-08 d1iu5a_ Rubredoxin
0035679 727 2005-09-08 d1brfa_ Rubredoxin
0045435 721 2005-09-08 d2rdva_ Rubredoxin
0051414 615 2008-09-10 d1yuza2 Rubredoxin
0046415 94 2008-09-10 d1dxga_ Desulforedoxin
0050321 95 2008-09-10 d1vzia2 Desulforedoxin
0046329 94 2008-09-10 d1dfxa2 Desulforedoxin
0045396 56 2005-09-08 d2occf_ Cytochrome c oxidase Subunit F