SUPERFAMILY 1.75 HMM library and genome assignments server

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RING/U-box superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 27 SUPERFAMILY models representing the RING/U-box superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0035646 2430 2005-09-08 d1bora_ RING finger domain, C3HC4
0047624 28 2008-09-10 d1jm7a_ RING finger domain, C3HC4
0046458 1647 2008-09-10 d1e4ua_ RING finger domain, C3HC4
0047962 125 2008-09-10 d1ldjb_ RING finger domain, C3HC4
0047475 2384 2008-09-10 d1iyma_ RING finger domain, C3HC4
0050469 196 2008-09-10 d1weoa_ RING finger domain, C3HC4
0046140 3946 2008-09-10 d1chca_ RING finger domain, C3HC4
0050087 3891 2008-09-10 d1v87a_ RING finger domain, C3HC4
0037895 3292 2005-09-08 d1g25a_ RING finger domain, C3HC4
0047625 10 2008-09-10 d1jm7b_ RING finger domain, C3HC4
0050592 1129 2008-09-10 d1wima_ RING finger domain, C3HC4
0046745 37 2008-09-10 d1fbva4 RING finger domain, C3HC4
0050433 543 2008-09-10 d1wd2a_ RING finger domain, C3HC4
0049212 2017 2008-09-10 d1rmda2 RING finger domain, C3HC4
0050527 1063 2008-09-10 d1wgma_ U-box
0053763 1687 2010-05-31 d2c2la2 U-box
0041252 303 2005-09-08 d1n87a_ U-box
0043836 1643 2005-09-08 d1t1ha_ U-box
0050318 719 2008-09-10 d1vyxa_ Variant RING domain
0052268 239 2008-09-10 d2cs3a1 Variant RING domain
0052291 1563 2008-09-10 d2ct7a1 IBR domain
0053934 669 2010-05-31 d2g45a1 Zf-UBP
0054689 854 2010-05-31 d2uzga1 Zf-UBP
0054129 641 2010-05-31 d2idaa1 Zf-UBP
0053909 938 2010-05-31 d2fc7a1 ZZ domain
0053608 513 2010-05-31 d1tota1 ZZ domain
0053820 1109 2010-05-31 d2dipa1 ZZ domain