SUPERFAMILY 1.75 HMM library and genome assignments server

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FYVE/PHD zinc finger superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 22 SUPERFAMILY models representing the FYVE/PHD zinc finger superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0050496 1723 2008-09-10 d1wfka_ FYVE, a phosphatidylinositol-3-phosphate binding domain
0050172 823 2008-09-10 d1vfya_ FYVE, a phosphatidylinositol-3-phosphate binding domain
0045116 305 2005-09-08 d1zbdb_ FYVE, a phosphatidylinositol-3-phosphate binding domain
0051161 1305 2008-09-10 d1y02a2 FYVE, a phosphatidylinositol-3-phosphate binding domain
0038788 575 2005-09-08 d1hyia_ FYVE, a phosphatidylinositol-3-phosphate binding domain
0036632 578 2005-09-08 d1dvpa2 FYVE, a phosphatidylinositol-3-phosphate binding domain
0037717 1626 2005-09-08 d1fp0a1 PHD domain
0050467 5184 2008-09-10 d1wema_ PHD domain
0050473 1659 2008-09-10 d1weua_ PHD domain
0050470 3611 2008-09-10 d1wepa_ PHD domain
0037409 1532 2005-09-08 d1f62a_ PHD domain
0050463 4868 2008-09-10 d1weea_ PHD domain
0050475 859 2008-09-10 d1wewa_ PHD domain
0048190 4981 2008-09-10 d1mm3a_ PHD domain
0050472 4767 2008-09-10 d1wesa_ PHD domain
0050468 5071 2008-09-10 d1wena_ PHD domain
0050462 4890 2008-09-10 d1we9a_ PHD domain
0050474 4459 2008-09-10 d1weva_ PHD domain
0048189 4960 2008-09-10 d1mm2a_ PHD domain
0050471 68 2008-09-10 d1weqa_ PHD domain
0054703 85 2010-05-31 d2v89a1 PHD domain
0050591 27 2008-09-10 d1wila_ variant PHD-like domain