SUPERFAMILY 1.75 HMM library and genome assignments server

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Tropomyosin superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 5 SUPERFAMILY models representing the Tropomyosin superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053486 320 2009-01-20 d1mv4b_ Tropomyosin
0053395 803 2009-01-20 d1c1gc_ Tropomyosin
0053467 532 2009-01-20 d1kqla_ Tropomyosin
0053560 778 2009-01-20 d2d3ec1 Tropomyosin
0053440 1011 2009-01-20 d1ic2a_ Tropomyosin