SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Tudor/PWWP/MBT superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 23 SUPERFAMILY models representing the Tudor/PWWP/MBT superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0054623 308 2010-05-31 d2qqra2 Tudor domain
0052883 172 2008-09-10 d2gfaa2 Tudor domain
0040933 311 2005-09-08 d1mhna_ Tudor domain
0043740 12 2005-09-08 d1ssfa2 Tudor domain
0052440 546 2008-09-10 d2diqa1 Tudor domain
0052413 528 2008-09-10 d2d9ta1 Tudor domain
0053036 1204 2008-09-10 d2hqxa1 Tudor domain
0043739 34 2005-09-08 d1ssfa1 Tudor domain
0052438 17 2008-09-10 d2diga1 Tudor domain
0051936 1032 2008-09-10 d2b8aa1 PWWP domain
0047119 748 2008-09-10 d1h3za_ PWWP domain
0052416 956 2008-09-10 d2daqa1 PWWP domain
0048268 1053 2008-09-10 d1n27a_ PWWP domain
0047802 948 2008-09-10 d1khca_ PWWP domain
0048573 1053 2008-09-10 d1oi1a1 MBT repeat
0050625 1048 2008-09-10 d1wjqa_ MBT repeat
0048667 811 2008-09-10 d1oz2a1 MBT repeat
0050627 923 2008-09-10 d1wjsa_ MBT repeat
0048669 1128 2008-09-10 d1oz2a3 MBT repeat
0048574 1126 2008-09-10 d1oi1a2 MBT repeat
0050626 865 2008-09-10 d1wjra_ MBT repeat
0048668 961 2008-09-10 d1oz2a2 MBT repeat
0054230 76 2010-05-31 d2jnga1 CPH domain