SUPERFAMILY 1.75 HMM library and genome assignments server

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MTH938-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the MTH938-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0052353 58 2008-09-10 d2cyja1 MTH938-like
0052790 312 2008-09-10 d2fvta1 MTH938-like
0051739 244 2008-09-10 d2ab1a1 MTH938-like
0052700 292 2008-09-10 d2fi9a1 MTH938-like
0039031 50 2005-09-08 d1ihna_ MTH938-like