SUPERFAMILY 1.75 HMM library and genome assignments server

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Chorismate lyase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 12 SUPERFAMILY models representing the Chorismate lyase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0037809 70 2005-09-08 d1fw9a_ Chorismate lyase
0054931 1847 2010-05-31 d3ddva1 UTRA domain
0054662 2118 2010-05-31 d2ra5a1 UTRA domain
0054396 1426 2010-05-31 d2ooia1 UTRA domain
0054142 1554 2010-05-31 d2ikka1 UTRA domain
0054899 1777 2010-05-31 d3cnva1 UTRA domain
0054517 1043 2010-05-31 d2pkha1 UTRA domain
0054370 1061 2010-05-31 d2ogga1 UTRA domain
0052630 1407 2008-09-10 d2fa1a1 UTRA domain
0054846 1432 2010-05-31 d3bwga2 UTRA domain
0054451 1896 2010-05-31 d2p19a1 UTRA domain
0054302 154 2010-05-31 d2nwia1 AF1396-like