SUPERFAMILY 1.75 HMM library and genome assignments server

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Phage tail proteins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 13 SUPERFAMILY models representing the Phage tail proteins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0039863 7 2005-09-08 d1k28d1 Baseplate protein-like
0054883 89 2010-05-31 d3cdda1 Baseplate protein-like
0054463 914 2010-05-31 d2p5zx2 Baseplate protein-like
0053632 92 2010-05-31 d1wrua1 Baseplate protein-like
0054919 97 2010-05-31 d3d37a1 Baseplate protein-like
0039864 6 2005-09-08 d1k28d2 Baseplate protein-like
0054884 166 2010-05-31 d3cdda2 Baseplate protein-like
0054464 266 2010-05-31 d2p5zx3 Baseplate protein-like
0053633 124 2010-05-31 d1wrua2 Baseplate protein-like
0054920 75 2010-05-31 d3d37a2 Baseplate protein-like
0039828 8 2005-09-08 d1k0ha_ gpFII-like
0054535 12 2010-05-31 d2pp6a1 gpFII-like
0053978 85 2010-05-31 d2guja1 XkdM-like