SUPERFAMILY 1.75 HMM library and genome assignments server

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Galactose mutarotase-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 24 SUPERFAMILY models representing the Galactose mutarotase-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0046376 501 2008-09-10 d1dp0a4 beta-Galactosidase, domain 5
0051369 515 2008-09-10 d1yq2a4 beta-Galactosidase, domain 5
0043394 42 2005-09-08 d1rwha3 Hyaluronate lyase-like, central domain
0035897 43 2005-09-08 d1cb8a3 Hyaluronate lyase-like, central domain
0039310 44 2005-09-08 d1j0ma3 Hyaluronate lyase-like, central domain
0037336 44 2005-09-08 d1f1sa4 Hyaluronate lyase-like, central domain
0038644 40 2005-09-08 d1hn0a4 Hyaluronate lyase-like, central domain
0036995 43 2005-09-08 d1egua3 Hyaluronate lyase-like, central domain
0044654 76 2005-09-08 d1v7wa2 Glycosyltransferase family 36 N-terminal domain
0038422 86 2005-09-08 d1h54a2 Glycosyltransferase family 36 N-terminal domain
0049429 766 2008-09-10 d1snza_ Aldose 1-epimerase (mutarotase)
0040407 270 2005-09-08 d1l7ka_ Aldose 1-epimerase (mutarotase)
0051490 814 2008-09-10 d1z45a1 Aldose 1-epimerase (mutarotase)
0048040 767 2008-09-10 d1lura_ Aldose 1-epimerase (mutarotase)
0044349 24 2005-09-08 d1ug9a4 Bacterial glucoamylase N-terminal domain-like
0040478 24 2005-09-08 d1lf6a2 Bacterial glucoamylase N-terminal domain-like
0047240 253 2008-09-10 d1htya2 alpha-mannosidase, C-terminal domain
0048510 547 2008-09-10 d1o7d.2 alpha-mannosidase, C-terminal domain
0039682 529 2005-09-08 d1jova_ Hypothetical protein HI1317
0039850 14 2005-09-08 d1k1xa2 4-alpha-glucanotransferase, C-terminal domain
0044155 62 2005-09-08 d1txka2 MdoG-like
0041434 17 2005-09-08 d1nkga3 Rhamnogalacturonase B, RhgB, N-terminal domain
0051663 12 2008-09-10 d1zy9a1 YicI N-terminal domain-like
0052583 596 2008-09-10 d2f2ha2 YicI N-terminal domain-like