SUPERFAMILY 1.75 HMM library and genome assignments server

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Cytochrome c oxidase subunit I-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 5 SUPERFAMILY models representing the Cytochrome c oxidase subunit I-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040791 3217 2005-09-08 d1m56a_ Cytochrome c oxidase subunit I-like
0035178 3202 2005-09-08 d1ar1a_ Cytochrome c oxidase subunit I-like
0037556 3103 2005-09-08 d1ffta_ Cytochrome c oxidase subunit I-like
0041780 3202 2005-09-08 d1ocra_ Cytochrome c oxidase subunit I-like
0037007 2356 2005-09-08 d1ehka_ Cytochrome c oxidase subunit I-like