SUPERFAMILY 1.75 HMM library and genome assignments server

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N-terminal domain of MutM-like DNA repair proteins superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the N-terminal domain of MutM-like DNA repair proteins superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0040360 250 2005-09-08 d1l1za2 N-terminal domain of MutM-like DNA repair proteins
0036935 259 2005-09-08 d1ee8a2 N-terminal domain of MutM-like DNA repair proteins
0043946 156 2005-09-08 d1tdha2 N-terminal domain of MutM-like DNA repair proteins
0039949 251 2005-09-08 d1k82a2 N-terminal domain of MutM-like DNA repair proteins
0041472 261 2005-09-08 d1nnja2 N-terminal domain of MutM-like DNA repair proteins
0039899 184 2005-09-08 d1k3xa2 N-terminal domain of MutM-like DNA repair proteins