SUPERFAMILY 1.75 HMM library and genome assignments server

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FF domain superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the FF domain superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0053837 775 2010-05-31 d2doea1 FF domain
0052247 651 2008-09-10 d2cqna1 FF domain
0053836 829 2010-05-31 d2doda1 FF domain
0044575 129 2005-09-08 d1uzca_ FF domain
0053838 822 2010-05-31 d2dofa1 FF domain
0053732 358 2010-05-31 d2b7ea1 FF domain