SUPERFAMILY 1.75 HMM library and genome assignments server

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Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 4 SUPERFAMILY models representing the Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0047458 1787 2008-09-10 d1iwga3 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
0047457 3548 2008-09-10 d1iwga2 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
0047459 1589 2008-09-10 d1iwga4 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
0047456 4642 2008-09-10 d1iwga1 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains