SUPERFAMILY 1.75 HMM library and genome assignments server

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PurS-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 4 SUPERFAMILY models representing the PurS-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0043874 127 2005-09-08 d1t4aa_ PurS subunit of FGAM synthetase
0050284 357 2008-09-10 d1vq3a_ PurS subunit of FGAM synthetase
0038258 122 2005-09-08 d1gtda_ PurS subunit of FGAM synthetase
0043865 84 2005-09-08 d1t3ta3 FGAM synthase PurL, PurS-like domain