SUPERFAMILY 1.75 HMM library and genome assignments server

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post-HMGL domain-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 3 SUPERFAMILY models representing the post-HMGL domain-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0041581 62 2005-09-08 d1nvma1 DmpG/LeuA communication domain-like
0049452 348 2008-09-10 d1sr9a1 DmpG/LeuA communication domain-like
0049233 793 2008-09-10 d1rqba1 Conserved carboxylase domain