SUPERFAMILY 1.75 HMM library and genome assignments server

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Ribosome-binding factor A, RbfA superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.

All 5 SUPERFAMILY models representing the Ribosome-binding factor A, RbfA superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0048720 588 2008-09-10 d1pa4a_ Ribosome-binding factor A, RbfA
0053866 644 2010-05-31 d2e7ga1 Ribosome-binding factor A, RbfA
0047823 838 2008-09-10 d1kkga_ Ribosome-binding factor A, RbfA
0053859 824 2010-05-31 d2dyja1 Ribosome-binding factor A, RbfA
0039680 238 2005-09-08 d1josa_ Ribosome-binding factor A, RbfA