SUPERFAMILY 1.75 HMM library and genome assignments server

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Ran binding protein zinc finger-like superfamily models

A superfamily is represented by one or more models; usually there is more than one model representing the superfamily. Since each model is built to capture the whole superfamily, they are likely to be overlapping and sometimes are mostly overlapping or even redundant to each other. Also models often do not score their own seed sequence more highly than other sequences in the superfamily, so it is a mistake to think that the model represents the seed sequence.

All models are available for immediate download after obtaining a license by filling in a short online registration form. Licenses are free for academic and commercial purposes.

Plots showing hydrophobicity, match emmission probabilities and insertion/deletion probabilities can be viewed for each model by following the model ID link.


All 6 SUPERFAMILY models representing the Ran binding protein zinc finger-like superfamily
Model ID No. of seqs Build date Seed sequence Family of seed
0054204 45 2010-05-31 d2j9ub1 Ran binding protein zinc finger-like
0052121 95 2008-09-10 d2c6ba1 Ran binding protein zinc finger-like
0053966 210 2010-05-31 d2gqea1 Ran binding protein zinc finger-like
0048377 186 2008-09-10 d1nj3a_ Ran binding protein zinc finger-like
0052255 94 2008-09-10 d2cr8a1 Ran binding protein zinc finger-like
0048257 130 2008-09-10 d1n0za_ Ran binding protein zinc finger-like