SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant ANatomical entity (PAN): in vitro plant structure

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   plant anatomical entity [PO:0025131] <3>
+ 1:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
0:   in vitro plant structure [PO:0000004] <3>(4|3) (4|0|0)
- 1:   cultured plant cell [PO:0000005] <3>(4|3) (4|0|0)
- 1:   cultured plant callus [PO:0000009] <2>(0|0) (0|0|0)
- 1:   cultured plant embryo [PO:0000010] <2>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Band 7/SPFH domain0.000000000005627Direct
HMG-box0.00000000003769Direct
Protein kinase-like (PK-like)0.0001581Direct
RNA-binding domain, RBD0.0001591Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
HMG-box0.0000000000338Direct
Canonical RBD0.00005065Direct
Protein kinases, catalytic subunit0.00009975Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Band 7/SPFH domain0.000000000004344Direct
HMG-box0.00000000002911Direct
Protein kinase-like (PK-like)0.0001241Direct
RNA-binding domain, RBD0.0001249Direct


Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)