SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Plant ANatomical entity (PAN): bud

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   plant anatomical entity [PO:0025131] <3>
+ + + + 4:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + + 3:   collective plant structure [PO:0025497] <2>(568|768) (570|338|104)
+ + 2:   collective plant organ structure [PO:0025007] <7>(531|726) (533|315|98)
+ 1:   shoot system [PO:0009006] <18>(516|705) (517|311|98)
0:   bud [PO:0000055] <4>(5|5) (5|1|0)
- 1:   reproductive bud [PO:0025084] <5>(4|4) (4|1|0)
- 1:   vegetative bud [PO:0000058] <3>(1|1) (1|0|0)
- 1:   axillary bud [PO:0004709] <2>(1|1) (1|0|0)
- 1:   terminal bud [PO:0004713] <2>(0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Amidase signature (AS) enzymes0.0000002701Direct
Ribokinase-like0.00008457Direct
ARM repeat0.000122Direct
UDP-Glycosyltransferase/glycogen phosphorylase0.0005412Direct
RNA-binding domain, RBD0.03197Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
U-box0.00000003547Direct
Amidase signature (AS) enzymes0.0000002903Direct
Glycosyl transferases group 10.000003608Direct
Ribokinase-like0.00004258Direct
Canonical RBD0.01703Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Amidase signature (AS) enzymes0.0000002095Direct
Ribokinase-like0.00006622Direct
ARM repeat0.0000957Direct
UDP-Glycosyltransferase/glycogen phosphorylase0.0004274Direct
RNA-binding domain, RBD0.02657Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57850,48371
  • 57850 - RING/U-box
  • 48371 - ARM repeat
  • 0.000000000567Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)