SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Plant ANatomical entity (PAN): parenchyma cell

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   plant anatomical entity [PO:0025131] <3>
+ + + 3:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
+ + + 3:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + 2:   portion of ground tissue [PO:0025059] <28>(19|21) (19|7|2)
+ + 2:   plant cell [PO:0009002] <33>(418|600) (419|264|86)
+ 1:   ground tissue cell [PO:0025030] <13>(7|6) (7|2|0)
+ 1:   parenchyma [PO:0005421] <14>(11|13) (11|3|0)
0:   parenchyma cell [PO:0000074] <6>(5|5) (5|2|0)
- 1:   chlorenchyma cell [PO:0000076] <4>(4|3) (4|1|0)
- 1:   companion cell [PO:0000071] <3>(1|2) (1|1|0)
- 1:   secondary xylem parenchyma cell [PO:0004525] <2>(0|0) (0|0|0)
- 1:   albuminous cell [PO:0025412](0|0) (0|0|0)
- 1:   callus parenchyma cell [PO:0025285](0|0) (0|0|0)
- 1:   epithem cell [PO:0000066](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Trimeric LpxA-like enzymes0.00000000001827Direct
Calcium ATPase, transduction domain A0.000000003432Direct
Calcium ATPase, transmembrane domain M0.000000003432Direct
HAD-like0.000002949Direct
EF-hand0.002369Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
glucose-1-phosphate thymidylyltransferase6.208e-16Direct
GlmU C-terminal domain-like0.000000000000003104Direct
Calcium ATPase, transmembrane domain M0.000000000117Direct
Meta-cation ATPase, catalytic domain P0.0000000005239Direct
Calcium ATPase, transduction domain A0.00000000356Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Trimeric LpxA-like enzymes0.00000000001411Direct
Calcium ATPase, transduction domain A0.000000002655Direct
Calcium ATPase, transmembrane domain M0.000000002655Direct
HAD-like0.000002293Direct
EF-hand0.001889Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
53448,51161
  • 53448 - Nucleotide-diphospho-sugar transferases
  • 51161 - Trimeric LpxA-like enzymes
  • 0.000000000000007632Direct
    56784,81665
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.0000000008193Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)