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Plant structure DEvelopment stage (PDE): M germinated pollen stage

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   reproductive shoot system development stage [PO:0025530] <2>(450|628) (449|297|94)
+ + + + + 5:   shoot system development stage [PO:0025527] <4>(460|639) (459|300|95)
+ + + + + 5:   flower development stage [PO:0007615] <3>(429|604) (429|285|92)
+ + + + + 5:   plant structure development stage [PO:0009012] <7>
+ + + + 4:   collective plant organ structure development stage [PO:0025338] <2>(463|641) (462|300|95)
+ + + + 4:   plant organ development stage [PO:0025339] <3>(419|594) (419|276|90)
+ + + + 4:   floral organ formation stage [PO:0025585] <3>(407|580) (407|271|89)
+ + + 3:   collective phyllome structure development stage [PO:0025578] <4>(407|580) (407|271|89)
+ + + 3:   floral organ differentiation stage [PO:0007600] <7>(407|580) (407|271|89)
+ + 2:   androecium development stage [PO:0007605] <3>(37|36) (38|14|1)
+ 1:   pollen development stage [PO:0001007] <13>(37|36) (38|14|1)
0:   M germinated pollen stage [PO:0001017] <1>(19|25) (20|13|1)
- 1:   N second mitotic division stage in germinating pollen [PO:0001074](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
S-adenosylmethionine synthetase0Direct
Heme-dependent catalase-like0Direct
PLP-binding barrel0Direct
F1F0 ATP synthase subunit C0Direct
Zinc-binding domain of translation initiation factor 2 beta0Direct
Aconitase iron-sulfur domain0Direct
Preprotein translocase SecE subunit0Direct
TATA-box binding protein-like0Direct
AN1-like Zinc finger0.00000438Direct
GAT-like domain0.00002048Direct
t-snare proteins0.00004794Direct
Cystatin/monellin0.0001666Direct
ArfGap/RecO-like zinc finger0.0001798Direct
Acyl-CoA dehydrogenase C-terminal domain-like0.0002415Direct
Acyl-CoA dehydrogenase NM domain-like0.0002415Direct
PAP/OAS1 substrate-binding domain0.000435Direct
(Phosphotyrosine protein) phosphatases II0.0008222Direct
eIF1-like0.0009138Direct
SufE/NifU0.0009138Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
MioX-like0Direct
Aconitase iron-sulfur domain0Direct
Nuclear movement domain0Direct
Cytidylyltransferase0Direct
Zinc-binding domain of translation initiation factor 2 beta0Direct
Aldose 1-epimerase (mutarotase)0Direct
Eps15 homology domain (EH domain)0Direct
RhoGDI-like0Direct
Ribosomal protein L10e0Direct
F1F0 ATP synthase subunit C0Direct
EDF1-like0Direct
Preprotein translocase SecE subunit0Direct
NifU/IscU domain0Direct
RWD domain0Direct
S-adenosylmethionine synthetase0Direct
Heme-dependent catalases0Direct
Phosphoinositide-binding clathrin adaptor, domain 20.000001219Direct
AN1-like Zinc finger0.000004548Direct
Phosphoinositide-binding clathrin adaptor, N-terminal domain0.00003776Direct
MutT-like0.0001286Direct
t-snare proteins0.0001415Direct
Pyk2-associated protein beta ARF-GAP domain0.0001904Direct
Conserved domain common to transcription factors TFIIS, elongin A, CRSP700.0002364Direct
LIM domain0.0008805Direct
eIF1-like0.0008805Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Preprotein translocase SecE subunit0Direct
Heme-dependent catalase-like0Direct
Aconitase iron-sulfur domain0Direct
S-adenosylmethionine synthetase0Direct
TATA-box binding protein-like0Direct
PLP-binding barrel0Direct
F1F0 ATP synthase subunit C0Direct
Zinc-binding domain of translation initiation factor 2 beta0Direct
AN1-like Zinc finger0.000003686Direct
GAT-like domain0.00001725Direct
t-snare proteins0.0000404Direct
Cystatin/monellin0.0001405Direct
ArfGap/RecO-like zinc finger0.0001517Direct
Acyl-CoA dehydrogenase C-terminal domain-like0.0002039Direct
Acyl-CoA dehydrogenase NM domain-like0.0002039Direct
PAP/OAS1 substrate-binding domain0.0003678Direct
(Phosphotyrosine protein) phosphatases II0.0006963Direct
eIF1-like0.0007741Direct
SufE/NifU0.0007741Direct
ENTH/VHS domain0.000913Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81333,81333
  • 81333 - F1F0 ATP synthase subunit C
  • 81333 - F1F0 ATP synthase subunit C
  • 0Direct
    53732,52016
  • 53732 - Aconitase iron-sulfur domain
  • 52016 - LeuD/IlvD-like
  • 0Direct
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0Direct
    50729,55961
  • 50729 - PH domain-like
  • 55961 - Bet v1-like
  • 0Direct
    48403,57850
  • 48403 - Ankyrin repeat
  • 57850 - RING/U-box
  • 0Direct
    100966,75689
  • 100966 - Translation initiation factor 2 beta, aIF2beta, N-terminal domain
  • 75689 - Zinc-binding domain of translation initiation factor 2 beta
  • 0Direct
    48464,89009
  • 48464 - ENTH/VHS domain
  • 89009 - GAT-like domain
  • 0.00001731Direct
    57716,118310
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 118310 - AN1-like Zinc finger
  • 0.00005358Direct
    54236,54236
  • 54236 - Ubiquitin-like
  • 54236 - Ubiquitin-like
  • 0.0001405Direct
    56645,47203
  • 56645 - Acyl-CoA dehydrogenase NM domain-like
  • 47203 - Acyl-CoA dehydrogenase C-terminal domain-like
  • 0.0002039Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0003083Direct
    81301,81631
  • 81301 - Nucleotidyltransferase
  • 81631 - PAP/OAS1 substrate-binding domain
  • 0.0003678Direct
    49599,54695
  • 49599 - TRAF domain-like
  • 54695 - POZ domain
  • 0.0007741Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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