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Plant structure DEvelopment stage (PDE): seed development stage

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   plant structure development stage [PO:0009012] <7>
0:   seed development stage [PO:0001170] <6>(28|34) (29|15|6)
- 1:   endosperm development stage [PO:0007633] <3>(0|0) (0|0|0)
- 1:   developing seed stage [PO:0004506](0|0) (0|0|0)
- 1:   dry seed stage [PO:0001040](1|0) (1|1|0)
- 1:   fertilized ovule stage [PO:0004505](0|0) (0|0|0)
- 1:   seed dormant stage [PO:0025374](0|0) (0|0|0)
- 1:   seed maturation stage [PO:0007632](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
NAD(P)-binding Rossmann-fold domains0.000000000005166Direct
GroEL-intermediate domain like0.000000002576Direct
GroEL equatorial domain-like0.000000004758Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000002182Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.00000002296Direct
GroEL apical domain-like0.00000002354Direct
14-3-3 protein0.0000001059Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.000000448Direct
Actin-like ATPase domain0.0000006309Direct
S-adenosylmethionine synthetase0.000002532Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.000005751Direct
TK C-terminal domain-like0.00001712Direct
LDH C-terminal domain-like0.00001712Direct
Succinyl-CoA synthetase domains0.00003602Direct
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.00003736Direct
Citrate synthase0.00008178Direct
RmlC-like cupins0.0001454Direct
Apolipoprotein A-I0.0001592Direct
Ferritin-like0.0001782Direct
Aldolase0.0002513Direct
Mannose-binding lectins0.0002522Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.0003474Direct
GST C-terminal domain-like0.0005655Direct
Trimeric LpxA-like enzymes0.0006184Direct
Single hybrid motif0.0008019Direct
Thiamin diphosphate-binding fold (THDP-binding)0.0008019Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Proteasome subunits0.000000000006435Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.00000003993Direct
14-3-3 protein0.0000003016Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.000001078Direct
S-adenosylmethionine synthetase0.000004347Direct
CoA-binding domain0.000004347Direct
Actin/HSP700.000006498Direct
FAD/NAD-linked reductases, N-terminal and central domains0.00001253Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.00001354Direct
GroEL chaperone, ATPase domain0.00001768Direct
GroEL-like chaperone, intermediate domain0.00001768Direct
GroEL-like chaperone, apical domain0.00001768Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.00001768Direct
Group II chaperonin (CCT, TRIC), intermediate domain0.00002106Direct
Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain0.00003103Direct
Lactate & malate dehydrogenases, C-terminal domain0.00003426Direct
LDH N-terminal domain-like0.00003426Direct
Germin/Seed storage 7S protein0.00004237Direct
Succinyl-CoA synthetase domains0.00006124Direct
PDI-like0.0001011Direct
Citrate synthase0.0001386Direct
GAPDH-like0.0001386Direct
Class I aldolase0.0001592Direct
Group II chaperonin (CCT, TRIC), apical domain0.0001592Direct
RecA protein-like (ATPase-domain)0.00024Direct
Formate/glycerate dehydrogenases, substrate-binding domain0.0002687Direct
CAT-like0.0002687Direct
Pathogenesis-related protein 10 (PR10)-like0.0002687Direct
Tyrosine-dependent oxidoreductases0.0003589Direct
Mannose-binding lectins0.0004912Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.0006746Direct
Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain0.000758Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
N-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
NAD(P)-binding Rossmann-fold domains0.000000000004342Direct
GroEL-intermediate domain like0.000000002165Direct
GroEL equatorial domain-like0.000000004Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.00000001835Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0000000193Direct
GroEL apical domain-like0.0000000198Direct
14-3-3 protein0.0000000891Direct
FAD/NAD-linked reductases, dimerisation (C-terminal) domain0.0000003769Direct
Actin-like ATPase domain0.0000005308Direct
S-adenosylmethionine synthetase0.000002131Direct
Heat shock protein 70kD (HSP70), C-terminal subdomain0.000004841Direct
TK C-terminal domain-like0.00001442Direct
LDH C-terminal domain-like0.00001442Direct
Succinyl-CoA synthetase domains0.00003034Direct
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain0.00003147Direct
Citrate synthase0.00006893Direct
RmlC-like cupins0.0001227Direct
Apolipoprotein A-I0.0001343Direct
Ferritin-like0.0001504Direct
Aldolase0.0002122Direct
Mannose-binding lectins0.000213Direct
Tryptophan synthase beta subunit-like PLP-dependent enzymes0.0002937Direct
GST C-terminal domain-like0.0004782Direct
Trimeric LpxA-like enzymes0.0005232Direct
Single hybrid motif0.0006791Direct
Thiamin diphosphate-binding fold (THDP-binding)0.0006791Direct
Formate/glycerate dehydrogenase catalytic domain-like0.0008542Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000002165Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.000000002165Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000000193Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.0000001242Direct
    51905,55424
  • 51905 - FAD/NAD(P)-binding domain
  • 55424 - FAD/NAD-linked reductases, dimerisation (C-terminal) domain
  • 0.0000003769Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.000001572Direct
    55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.000002131Direct
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0.00001442Direct
    51101,51101
  • 51101 - Mannose-binding lectins
  • 51101 - Mannose-binding lectins
  • 0.00001442Direct
    52518,52922
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 52922 - TK C-terminal domain-like
  • 0.00001442Direct
    51735,55347
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 55347 - Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
  • 0.00003147Direct
    52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.0001504Direct
    52283,51735
  • 52283 - Formate/glycerate dehydrogenase catalytic domain-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0.0005846Direct
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 0.0009819Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000000002165Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0000000193Direct
    51101,51101,51101
  • 51101 - Mannose-binding lectins
  • 51101 - Mannose-binding lectins
  • 51101 - Mannose-binding lectins
  • 0.000001301Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.000001572Direct
    55973,55973,55973
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 55973 - S-adenosylmethionine synthetase
  • 0.000002131Direct
    52833,52833,52833
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 52833 - Thioredoxin-like
  • 0.0003821Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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