SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant ANatomical entity (PAN): vascular bundle

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   plant anatomical entity [PO:0025131] <3>
+ + + 3:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + + 3:   whole plant [PO:0000003] <7>(223|355) (227|170|61)
+ + 2:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
+ + 2:   vascular system [PO:0000034] <15>(25|31) (26|11|2)
+ 1:   portion of vascular tissue [PO:0009015] <5>(15|18) (16|7|2)
0:   vascular bundle [PO:0005020] <3>(4|4) (4|3|2)
- 1:   phyllome lamina vein [PO:0025348] <1>(0|1) (0|0|0)
- 1:   pericarp vascular bundle [PO:0025203](0|0) (0|0|0)
- 1:   petiole vascular bundle [PO:0025434](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
RuBisCO, small subunit0.000000006976Direct
Formate/glycerate dehydrogenase catalytic domain-like0.000004694Direct
Mitochondrial carrier0.0001527Direct
ABC transporter transmembrane region0.0004572Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Adenosine-5'phosphosulfate kinase (APS kinase)0Direct
Formate/glycerate dehydrogenases, NAD-domain0.000004767Direct
Mitochondrial carrier0.0002331Direct
ABC transporter transmembrane region0.0004821Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
RuBisCO, small subunit0.000000005398Direct
Formate/glycerate dehydrogenase catalytic domain-like0.000003653Direct
Mitochondrial carrier0.0001199Direct
ABC transporter transmembrane region0.0003607Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52283,51735
  • 52283 - Formate/glycerate dehydrogenase catalytic domain-like
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0.000002545Direct
    52540,90123
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.00006024Direct
    90123,52540
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.0003256Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52540,90123,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.00005089Direct
    90123,52540,90123
  • 90123 - ABC transporter transmembrane region
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 90123 - ABC transporter transmembrane region
  • 0.00005089Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)