SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant ANatomical entity (PAN): phloem

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   plant anatomical entity [PO:0025131] <3>
+ + + 3:   whole plant [PO:0000003] <7>(223|355) (227|170|61)
+ + + 3:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + 2:   vascular system [PO:0000034] <15>(25|31) (26|11|2)
+ + 2:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
+ 1:   portion of vascular tissue [PO:0009015] <5>(15|18) (16|7|2)
0:   phloem [PO:0005417] <7>(4|5) (4|2|0)
- 1:   primary phloem [PO:0006075] <6>(0|0) (0|0|0)
- 1:   secondary phloem [PO:0005043] <5>(0|0) (0|0|0)
- 1:   sieve element [PO:0025406] <4>(0|0) (0|0|0)
- 1:   companion cell [PO:0000071] <3>(1|2) (1|1|0)
- 1:   phloem fiber cell [PO:0004519] <1>(0|0) (0|0|0)
- 1:   sieve tube [PO:0025416] <1>(0|0) (0|0|0)
- 1:   albuminous cell [PO:0025412](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Trimeric LpxA-like enzymes0.00000000008556Direct
Nucleotide-diphospho-sugar transferases0.0001899Direct
GST C-terminal domain-like0.0003047Direct
Thioredoxin-like0.0005478Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
GlmU C-terminal domain-like6.208e-16Direct
glucose-1-phosphate thymidylyltransferase0.0000000000001321Direct
GARP response regulators0.000001138Direct
Glutathione S-transferase (GST), C-terminal domain0.0006081Direct
Glutathione S-transferase (GST), N-terminal domain0.0006081Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Trimeric LpxA-like enzymes0.00000000006609Direct
Nucleotide-diphospho-sugar transferases0.0001492Direct
GST C-terminal domain-like0.0002398Direct
Thioredoxin-like0.0004327Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
53448,51161
  • 53448 - Nucleotide-diphospho-sugar transferases
  • 51161 - Trimeric LpxA-like enzymes
  • 0.000000000000005088Direct
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 0.0002398Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)