SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Plant ANatomical entity (PAN): parenchyma

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   plant anatomical entity [PO:0025131] <3>
+ + + 3:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + 2:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
+ 1:   portion of ground tissue [PO:0025059] <28>(19|21) (19|7|2)
0:   parenchyma [PO:0005421] <14>(11|13) (11|3|0)
- 1:   parenchyma cell [PO:0000074] <6>(5|5) (5|2|0)
- 1:   chlorenchyma [PO:0005426] <4>(8|8) (8|3|0)
- 1:   pith [PO:0006109] <4>(0|0) (0|0|0)
- 1:   aerenchyma [PO:0005702] <3>(0|0) (0|0|0)
- 1:   root parenchyma [PO:0025095] <3>(3|4) (3|0|0)
- 1:   secondary xylem parenchyma [PO:0004532] <3>(0|0) (0|0|0)
- 1:   storage parenchyma [PO:0025035] <3>(0|0) (0|0|0)
- 1:   perimedullary zone [PO:0025058] <2>(0|0) (0|0|0)
- 1:   petal parenchyma [PO:0006069] <1>(0|0) (0|0|0)
- 1:   sepal parenchyma [PO:0006068] <1>(0|0) (0|0|0)
- 1:   epiphragm [PO:0030054](0|0) (0|0|0)
- 1:   nectary parenchyma [PO:0000309](0|0) (0|0|0)
- 1:   petiole parenchyma [PO:0006066](0|0) (0|0|0)
- 1:   placentoid [PO:0020005](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RuBisCO, small subunit0Direct
SRF-like0.0002086Direct
Chlorophyll a-b binding protein0.0006072Direct
Trimeric LpxA-like enzymes0.01782Inherited
NAC domain0.11Inherited
EF-hand0.1374Inherited
Calcium ATPase, transmembrane domain M0.1625Inherited
Calcium ATPase, transduction domain A0.1625Inherited
HAD-like0.1625Inherited
Nucleotide-diphospho-sugar transferases0.5703Inherited
Cullin repeat-like0.687Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RuBisCO, small subunit0Direct
glucose-1-phosphate thymidylyltransferase0.000000000001045Direct
SRF-like0.0002866Direct
Actin/HSP700.0005994Direct
Chlorophyll a-b binding protein0.001372Inherited
U-box0.004091Inherited
GlmU C-terminal domain-like0.01654Inherited
Calcium ATPase, transmembrane domain M0.01654Inherited
NAC domain0.1083Inherited
Calcium ATPase, transduction domain A0.1588Inherited
Meta-cation ATPase, catalytic domain P0.1588Inherited
ABC transporter ATPase domain-like0.1761Inherited
Exocyst complex component0.6907Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
RuBisCO, small subunit0Direct
SRF-like0.000164Direct
Chlorophyll a-b binding protein0.0004799Direct
Trimeric LpxA-like enzymes0.01458Inherited
NAC domain0.0956Inherited
EF-hand0.1213Inherited
Calcium ATPase, transduction domain A0.1446Inherited
HAD-like0.1446Inherited
Calcium ATPase, transmembrane domain M0.1446Inherited
Nucleotide-diphospho-sugar transferases0.5455Inherited
Cullin repeat-like0.6628Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57850,48371
  • 57850 - RING/U-box
  • 48371 - ARM repeat
  • 0.000508Direct
    53448,51161
  • 53448 - Nucleotide-diphospho-sugar transferases
  • 51161 - Trimeric LpxA-like enzymes
  • 0.01458Inherited
    56784,81665
  • 56784 - HAD-like
  • 81665 - Calcium ATPase, transmembrane domain M
  • 0.06117Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)