SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant ANatomical entity (PAN): shoot meristem

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Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   plant anatomical entity [PO:0025131] <3>
+ + + 3:   plant structure [PO:0009011] <13>(589|796) (590|352|108)
+ + + 3:   collective plant structure [PO:0025497] <2>(568|768) (570|338|104)
+ + 2:   portion of plant tissue [PO:0009007] <57>(381|548) (383|235|78)
+ + 2:   collective plant organ structure [PO:0025007] <7>(531|726) (533|315|98)
+ 1:   portion of meristem tissue [PO:0009013] <23>(122|205) (124|96|39)
+ 1:   shoot system [PO:0009006] <18>(516|705) (517|311|98)
0:   shoot meristem [PO:0006079] <3>(7|8) (8|6|1)
- 1:   shoot apical meristem [PO:0020148] <9>(7|6) (8|5|1)
- 1:   intercalary meristem [PO:0006073] <2>(0|0) (0|0|0)
- 1:   axillary bud meristem [PO:0000232] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
CheY-like8.24e-16Direct
TAZ domain0.000000002191Direct
Bet v1-like0.00000001178Direct
FYVE/PHD zinc finger0.000006522Direct
Skp1 dimerisation domain-like0.0003222Direct
Histone-fold0.001045Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
CheY-related0.0000000001605Direct
TAZ domain0.000000002406Direct
GARP response regulators0.0000003284Direct
PHD domain0.0000021Direct
ZZ domain0.000002481Direct
Nucleosome core histones0.00005496Direct
Chalcone synthase-like0.0007334Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
CheY-like6.361e-16Direct
TAZ domain0.000000001694Direct
Bet v1-like0.000000009119Direct
FYVE/PHD zinc finger0.000005079Direct
Skp1 dimerisation domain-like0.0002535Direct
Histone-fold0.0008277Direct
POZ domain0.001876Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57850,57933
  • 57850 - RING/U-box
  • 57933 - TAZ domain
  • 0Direct
    52172,46689
  • 52172 - CheY-like
  • 46689 - Homeodomain-like
  • 0.00000000000001081Direct
    55961,55961
  • 55961 - Bet v1-like
  • 55961 - Bet v1-like
  • 0.000000003476Direct
    57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.000001612Direct
    52047,52058
  • 52047 - RNI-like
  • 52058 - L domain-like
  • 0.000003127Direct
    54695,81382
  • 54695 - POZ domain
  • 81382 - Skp1 dimerisation domain-like
  • 0.0002535Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57850,57850,57933
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 57933 - TAZ domain
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)