SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant structure DEvelopment stage (PDE): 0 seed germination stage

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   plant structure development stage [PO:0009012] <7>
+ + + 3:   whole plant development stage [PO:0007033] <3>(321|479) (321|217|77)
+ + + 3:   life of whole plant stage [PO:0025337] <2>(317|475) (317|215|77)
+ + 2:   sporophyte development stage [PO:0028002] <5>(317|475) (317|215|77)
+ 1:   sporophyte vegetative stage [PO:0007134] <6>(316|474) (316|215|77)
0:   0 seed germination stage [PO:0007057] <4>(12|14) (12|4|1)
- 1:   coleoptile emergence stage [PO:0007045](0|0) (0|0|0)
- 1:   coleorhiza emergence stage [PO:0025475](0|0) (0|0|0)
- 1:   radicle emergence stage [PO:0007015](0|0) (0|0|0)
- 1:   seed imbibition stage [PO:0007022](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
TPR-like0Direct
HCP-like0Direct
DNA/RNA polymerases0.00000004209Direct
alpha-helical ferredoxin0.00000007Direct
Class II aaRS ABD-related0.0000006417Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00003181Direct
Class II aaRS and biotin synthetases0.00004858Direct
2Fe-2S ferredoxin-like0.0001448Direct
GroEL-intermediate domain like0.0001841Direct
GroEL equatorial domain-like0.0002307Direct
GroEL apical domain-like0.0004208Direct
alpha/beta-Hydrolases0.6018Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
T7 RNA polymerase0Direct
Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain0Direct
Anticodon-binding domain of Class II aaRS0.000000008311Direct
2Fe-2S ferredoxin domains from multidomain proteins0.0000001981Direct
GroEL-like chaperone, intermediate domain0.000001627Direct
GroEL-like chaperone, apical domain0.000001627Direct
GroEL chaperone, ATPase domain0.000001627Direct
Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain0.000002682Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.000006253Direct
Carboxylesterase0.00003071Direct
Class I aminoacyl-tRNA synthetases (RS), catalytic domain0.000037Direct
Glycosyl transferases group 10.00008596Direct
Mitochondrial carrier0.0002328Direct
PP2C-like0.0003883Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
TPR-like0Direct
HCP-like0Direct
DNA/RNA polymerases0.0000000354Direct
alpha-helical ferredoxin0.00000005887Direct
Class II aaRS ABD-related0.0000005399Direct
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases0.00002679Direct
Class II aaRS and biotin synthetases0.00004094Direct
2Fe-2S ferredoxin-like0.0001222Direct
GroEL-intermediate domain like0.0001553Direct
GroEL equatorial domain-like0.0001947Direct
GroEL apical domain-like0.0003558Direct
alpha/beta-Hydrolases0.5675Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54292,46548
  • 54292 - 2Fe-2S ferredoxin-like
  • 46548 - alpha-helical ferredoxin
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0001553Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.0001553Direct
    48452,48452
  • 48452 - TPR-like
  • 48452 - TPR-like
  • 0.0009317Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.0001553Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)