SUPERFAMILY 1.75 HMM library and genome assignments server

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Plant structure DEvelopment stage (PDE): sporophyte reproductive stage

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: AP Hierarchy (arabidopsis plant ontology with 2 sub-ontologies AN, DE)

Shortest distance to current term (+ for parents, - for children) AP term [AP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   plant structure development stage [PO:0009012] <7>
+ + 2:   whole plant development stage [PO:0007033] <3>(321|479) (321|217|77)
+ + 2:   life of whole plant stage [PO:0025337] <2>(317|475) (317|215|77)
+ 1:   sporophyte development stage [PO:0028002] <5>(317|475) (317|215|77)
0:   sporophyte reproductive stage [PO:0007130] <3>(2|1) (2|1|0)
- 1:   whole plant flowering stage [PO:0007016] <5>(0|0) (0|0|0)
- 1:   whole plant inflorescence detectable stage [PO:0007047] <5>(1|1) (1|1|0)
- 1:   whole plant fruit development stage [PO:0025500] <2>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleic acid-binding proteins0.00000001167Direct
P-loop containing nucleoside triphosphate hydrolases0.000002705Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
DNA replication initiator (cdc21/cdc54) N-terminal domain0Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nucleic acid-binding proteins0.00000000981Direct
P-loop containing nucleoside triphosphate hydrolases0.000002276Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.000009728Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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