SUPERFAMILY 1.75 HMM library and genome assignments server

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Enzyme Commission (EC): Poly(A)-specific ribonuclease

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: EC Hierarchy (from IntEnz release 70)

Shortest distance to current term (+ for parents, - for children) EC term [EC ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   root [root] <7>
+ + + 3:   Hydrolases [3] <13>(395|668) (394|417|206)
+ + 2:   Acting on ester bonds [3.1] <23>(157|226) (157|126|55)
+ 1:   Exoribonucleases producing 5'-phosphomonoesters [3.1.13] <5>(19|19) (19|18|13)
0:   Poly(A)-specific ribonuclease [3.1.13.4](7|5) (7|4|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
WD40 repeat-like0Direct
DNase I-like0Direct
Cysteine proteinases0Direct
L domain-like0Direct
R3H domain0Direct
RNA-binding domain, RBD0.0000000000004255Direct
Quinoprotein alcohol dehydrogenase-like0.0000000003399Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
R3H domain0Direct
CAF1-like ribonuclease0Direct
Canonical RBD7.36e-16Direct
WD40-repeat0.000000002296Direct
DnaQ-like 3'-5' exonuclease0.0000001901Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
L domain-like0Direct
R3H domain0Direct
WD40 repeat-like0Direct
Cysteine proteinases0Direct
DNase I-like0Direct
RNA-binding domain, RBD0.0000000000003046Direct
Quinoprotein alcohol dehydrogenase-like0.0000000002516Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52058,56219
  • 52058 - L domain-like
  • 56219 - DNase I-like
  • 0Direct
    53098,54928
  • 53098 - Ribonuclease H-like
  • 54928 - RNA-binding domain, RBD
  • 0Direct
    54001,53098
  • 54001 - Cysteine proteinases
  • 53098 - Ribonuclease H-like
  • 0Direct
    82708,53098
  • 82708 - R3H domain
  • 53098 - Ribonuclease H-like
  • 0Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    82708,53098,54928
  • 82708 - R3H domain
  • 53098 - Ribonuclease H-like
  • 54928 - RNA-binding domain, RBD
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)