SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Enzyme Commission (EC): Cyclo-ligases

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: EC Hierarchy (from IntEnz release 70)

Shortest distance to current term (+ for parents, - for children) EC term [EC ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   root [root] <7>
+ + 2:   Ligases [6] <6>(96|123) (95|112|69)
+ 1:   Forming carbon-nitrogen bonds [6.3] <5>(59|78) (58|59|38)
0:   Cyclo-ligases [6.3.3] <7>(9|10) (9|6|4)
- 1:   (Carboxyethyl)arginine beta-lactam-synthase [6.3.3.4](0|0) (0|0|0)
- 1:   5-formyltetrahydrofolate cyclo-ligase [6.3.3.2](2|2) (2|1|0)
- 1:   Carbapenam-3-carboxylate synthase [6.3.3.6](0|0) (0|0|0)
- 1:   Dethiobiotin synthase [6.3.3.3](1|1) (1|0|0)
- 1:   Ni-sirohydrochlorin a,c-diamide reductive cyclase [6.3.3.7](1|1) (1|0|0)
- 1:   O-ureido-D-serine cyclo-ligase [6.3.3.5](0|0) (0|0|0)
- 1:   Phosphoribosylformylglycinamidine cyclo-ligase [6.3.3.1](5|6) (5|5|4)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
PurM C-terminal domain-like0Direct
PurM N-terminal domain-like0Direct
P-loop containing nucleoside triphosphate hydrolases0.000000000000001014Direct
Formiminotransferase domain of formiminotransferase-cyclodeaminase.0.00000003312Direct
NagB/RpiA/CoA transferase-like0.0002966Direct
Formyltransferase0.004051Inherited
"Helical backbone" metal receptor0.004898Inherited
Rudiment single hybrid motif0.5775Inherited
PreATP-grasp domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
PurM N-terminal domain-like0Direct
PurM C-terminal domain-like0Direct
Nitrogenase iron protein-like0Direct
Methenyltetrahydrofolate synthetase0Direct
Formiminotransferase domain of formiminotransferase-cyclodeaminase.0.00000003561Direct
Nitrogenase iron-molybdenum protein0.00127Inherited
Formyltransferase0.005506Inherited
BC C-terminal domain-like0.5379Inherited
BC N-terminal domain-like1Inherited
BC ATP-binding domain-like1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PurM C-terminal domain-like0Direct
PurM N-terminal domain-like0Direct
P-loop containing nucleoside triphosphate hydrolases7.066e-16Direct
Formiminotransferase domain of formiminotransferase-cyclodeaminase.0.00000002517Direct
NagB/RpiA/CoA transferase-like0.0002418Direct
Formyltransferase0.003395Inherited
"Helical backbone" metal receptor0.004111Inherited
Rudiment single hybrid motif0.53Inherited
PreATP-grasp domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55326,56042
  • 55326 - PurM N-terminal domain-like
  • 56042 - PurM C-terminal domain-like
  • 0Direct
    56042,53328
  • 56042 - PurM C-terminal domain-like
  • 53328 - Formyltransferase
  • 0Direct
    51246,55326
  • 51246 - Rudiment single hybrid motif
  • 55326 - PurM N-terminal domain-like
  • 0Direct
    55116,55116
  • 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase.
  • 55116 - Formiminotransferase domain of formiminotransferase-cyclodeaminase.
  • 0.00000002517Direct
    56059,51246
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 51246 - Rudiment single hybrid motif
  • 0.53Inherited
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    56059,51246,55326
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 51246 - Rudiment single hybrid motif
  • 55326 - PurM N-terminal domain-like
  • 0Direct
    51246,55326,56042
  • 51246 - Rudiment single hybrid motif
  • 55326 - PurM N-terminal domain-like
  • 56042 - PurM C-terminal domain-like
  • 0Direct
    55326,56042,53328
  • 55326 - PurM N-terminal domain-like
  • 56042 - PurM C-terminal domain-like
  • 53328 - Formyltransferase
  • 0Direct
    52440,56059,51246
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 51246 - Rudiment single hybrid motif
  • 0.5215Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)