SUPERFAMILY 1.75 HMM library and genome assignments server

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Fly Anatomy (FA): stem cell

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: FA Hierarchy (fly anatomy from FlyBase anatomy ontology)

Shortest distance to current term (+ for parents, - for children) FA term [FA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical entity [FBbt:99999999] <4>
+ + + 3:   material anatomical entity [FBbt:00007016] <6>(240|245) (239|100|32)
+ + 2:   anatomical structure [FBbt:00007001] <6>(240|245) (239|100|32)
+ 1:   cell [FBbt:00007002] <7>(77|96) (78|38|15)
0:   stem cell [FBbt:00007014] <2>(15|12) (15|3|0)
- 1:   somatic stem cell [FBbt:00007344] <4>(11|9) (11|2|0)
- 1:   germline stem cell [FBbt:00004861] <3>(4|2) (4|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Prefoldin0Direct
GINS helical bundle-like0Direct
Ferritin-like0Direct
PriA/YqbF domain0Direct
post-AAA+ oligomerization domain-like0Direct
SMAD/FHA domain0.01143Inherited
Protein kinase-like (PK-like)0.01797Inherited
SMAD MH1 domain0.04654Inherited
Tubulin nucleotide-binding domain-like0.1804Inherited
Snake toxin-like0.2001Inherited
dsRNA-binding domain-like0.2916Inherited
Tubulin C-terminal domain-like0.2929Inherited
Homeodomain-like0.3735Inherited
Growth factor receptor domain0.4771Inherited
SH2 domain0.7375Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
MBT repeat0Direct
DNA polymerase III clamp loader subunits, C-terminal domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Prefoldin0Direct
SMAD MH1 domain0.03381Inherited
SMAD domain0.03381Inherited
Protein kinases, catalytic subunit0.03492Inherited
Phoshoinositide 3-kinase (PI3K), catalytic domain0.04392Inherited
Tubulin, GTPase domain0.1462Inherited
Tubulin, C-terminal domain0.2478Inherited
Homeodomain0.2722Inherited
SH2 domain0.7064Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GINS helical bundle-like0Direct
post-AAA+ oligomerization domain-like0Direct
Ferritin-like0Direct
PriA/YqbF domain0Direct
Prefoldin0Direct
SMAD/FHA domain0.008545Inherited
Protein kinase-like (PK-like)0.01371Inherited
SMAD MH1 domain0.03693Inherited
Tubulin nucleotide-binding domain-like0.1562Inherited
Snake toxin-like0.1744Inherited
dsRNA-binding domain-like0.2609Inherited
Tubulin C-terminal domain-like0.2622Inherited
Homeodomain-like0.341Inherited
Growth factor receptor domain0.4449Inherited
SH2 domain0.7147Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63748,63748
  • 63748 - Tudor/PWWP/MBT
  • 63748 - Tudor/PWWP/MBT
  • 0Direct
    52540,48019
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 48019 - post-AAA+ oligomerization domain-like
  • 0Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.2622Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)