SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Phenotypic Abnormality (PA): Neoplasm of the skeletal system

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: HP Hierarchy (human phenotype with 3 sub-ontologies PA, MI, ON)

Shortest distance to current term (+ for parents, - for children) HP term [HP ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Phenotypic abnormality [HP:0000118] <25>
+ + 2:   Neoplasm [HP:0002664] <2>(20|21) (23|8|3)
+ + 2:   Abnormality of the skeletal system [HP:0000924] <7>(88|98) (93|55|34)
+ 1:   Neoplasm by anatomical site [HP:0011793] <24>(18|19) (20|7|2)
+ 1:   Abnormality of skeletal morphology [HP:0011842] <17>(86|89) (90|52|33)
0:   Neoplasm of the skeletal system [HP:0010622] <10>(1|2) (2|1|0)
- 1:   Exostoses [HP:0100777] <7>(0|0) (0|0|0)
- 1:   Enchondroma [HP:0030038] <1>(0|0) (0|0|0)
- 1:   Osteoma [HP:0100246] <1>(0|0) (0|0|0)
- 1:   Chondroblastoma [HP:0030432](0|0) (0|0|0)
- 1:   Chondrosarcoma [HP:0006765](0|0) (0|0|0)
- 1:   Chordoma [HP:0010762](0|0) (0|0|0)
- 1:   Giant cell tumor of bone [HP:0011847](0|0) (0|0|0)
- 1:   Osteoblastoma [HP:0011846](0|0) (0|0|0)
- 1:   Osteochondroma [HP:0030431](0|0) (0|0|0)
- 1:   Osteosarcoma [HP:0002669](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.00002737Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
DNA gyrase/MutL, second domain0.0000005031Direct
DNA gyrase/MutL, N-terminal domain0.0000005031Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase0.00001197Direct
Ribosomal protein S5 domain 2-like0.0005762Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55874,54211
  • 55874 - ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
  • 54211 - Ribosomal protein S5 domain 2-like
  • 0.0000002545Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)